DNA Damage Atlas


GSM6195483-S1-END-seq_GM15850_G1arrest




Basic Information

Manual

Sample ID:   

SRR19400120


Source Project ID:   

GSE203632

Cell Type:   

GM15850


Organism:   

Homo sapiens


Treatment:   

Palbociclib


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Genotype:   

Friedrich's ataxia patient cells


In-situ Treatment:   

Exo VII + Exo T + S1


Cell Phase:   

G1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.025228



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240301412254090938.0342-
chr140539793405400094054000033.0488-
chr9_gl000199_random33827353863445016.4372+
chr1756407910564098815640885016.0659-
chrUn_gl00021680501812448071115.2738-
chr9_gl000199_random43727460394423714.5144+
chrUn_gl00021463648660906431814.2664+
chr912833815112833902812833875413.4966-
chr1542549084425497474254952013.3437-
chr265101711651022316510191812.9066-
Download the Full Peak List



Motif Analysis

Manual





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