DNA Damage Atlas

GSM6195484-S1-END-seq_PrimaryFibroblasts

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19400119


Source Project ID:   

GSE203632

Cell Type:   

Primary human skin fibroblasts


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.031484


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240449414734090921.3836-
chr9_gl000199_random33834351753450714.8733-
chrUn_gl00022513142613215213180114.3623-
chrUn_gl00021463240662296438214.3117+
chrUn_gl00021680327809368070611.1949-
chr1945976067459769554597637711.0196+
chrUn_gl00022564307206686810.8185-
chrUn_gl0002281149831203361185639.95922-
chr19_gl000208_random48141838.31789+
chr69852448698524943985249326.72789-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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