DNA Damage Atlas

GSM6195485-S1-END-seq_HACAT

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19400122


Source Project ID:   

GSE203632

Cell Type:   

HACAT


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.002101


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1112724496612724546512724534523.0849-
chr9_gl000199_random33827350713445017.4365+
chrUn_gl00021680337810018070116.7202-
chrX34622633346232723462297811.9009-
chr123728059723728126123728105611.6462+
chr1151399655140217514017411.5871-
chr1056414618564152825641499611.4045-
chr753305038533059455330553011.2147-
chr741601925416027384160233011.0115+
chr713745175013745263913745222110.7559-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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