DNA Damage Atlas

GSM6195486-S1-END-seq_NHEK

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19400118


Source Project ID:   

GSE203632

Cell Type:   

NHEK


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

no spike in


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.036852


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021240433416084090927.3294-
chrUn_gl00021463647662406507514.1201+
chr9_gl000199_random33819350713450712.5412-
chrUn_gl00022811547912033611853311.9021-
chrUn_gl00022563227365690710.0928-
chrUn_gl0002161619281648431636099.37464-
chr12098080132098087912098082538.42813-
chrUn_gl0002161680881706461696907.45454-
chr19_gl000208_random06301576.80744+
chrUn_gl0002168018180990807116.3527-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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