DNA Damage Atlas

GSM6215138-BLISS_HU_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570669


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea


Treatment Time:   

4hrs


Treatment Dose:   

3.5mM Hydroxyurea


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.136364


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr101208017641208021281208020611347.63-
rDNA6988735371451025.64+
chrUn_gl000216805078074580713759.346-
chrM971467901669.001-
chr11652669186526739065266988656.384+
chr1168189615168189835168189615645.444+
chrM294840483211645.444+
chrM155028192348579.832-
chr9991126339911284299112633494.12+
chr13459651574596538545965385452.943-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101208017781208021281208020611248.05-
chrUn_gl000216805078074580713829.615-
rDNA698873497145806.329+
chr11652669226526722665266988795.633+
chrM971195901733.236-
chrM170228192348599.712-
chr13459651574596538545965385524.52-
chr5121364137121364353121364153358.907+
chr16878640718786432387864234307.765-
chr3471616934716194947161878290.699-


Visualization

Manual



Motif Analysis

Manual





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