DNA Damage Atlas

GSM6215139-BLISS_HU_BI8626_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570668


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + BI8626


Treatment Time:   

4hrs + 4hrs


Treatment Dose:   

3.5mM Hydroxyurea + 10uM BI8626


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr2157116447157116794157116457356.613+
chr11652669016526730465266901339.381+
chr10120801753120802142120802062301.367-
chrM9544282438290.096-
chrUn_gl000216802158100880730238.176-
chr9_gl000199_random110311110586110581236.832-
chr3191824783191824985191824784225.694+
chr1109910913109911119109910913221.311+
chr11111133967111134173111134167221.311-
chr19152878801528808615287880221.311+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000216805068074480730706.958-
chrM10829262438615.451-
chr20445272804452754244527342201.046+
chr16878641228786432787864213169.753-


Visualization

Manual



Motif Analysis

Manual





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