DNA Damage Atlas

GSM6215141-BLISS_HU_Dox_BI8626_rep1

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570666


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + BI8626 + Doxycycline


Treatment Time:   

4hrs + 4hrs + 24hrs


Treatment Dose:   

3.5mM Hydroxyurea + 10uM BI8626 + 1ug/mL Doxycycline


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr17588768805887709458876880636.504+
chrM474352791592.128-
chr11760665187606672576066720423.018-
chr2157116457157116716157116457413.219+
chr5681968066819701268197010377.842-
chr12120729004120729211120729204376.016-
chr20268371526839222683915376.016-
chrUn_gl000216756257603576035355.955-
chrUn_gl000216802908090680745347.479-
chr9740917374093747409174338.836+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrM664135791664.44-
chr2157116457157116709157116457465.745+
chr6528605495286074952860748420.104-
chr10120801861120802080120802062225.138-
chr9_gl000199_random110381110581110581197.923-
chrUn_gl000216143418741634157.837-


Visualization

Manual



Motif Analysis

Manual





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