DNA Damage Atlas

GSM6215142-BLISS_HU_rep2

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570665


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea


Treatment Time:   

4hrs


Treatment Dose:   

3.5mM Hydroxyurea


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10120801778120802143120802061835.947-
chr11738347787383498773834778634.743+
chr21477998784780008747800078634.743-
chr2935658393567919356583574.015+
chrUn_gl000216756317612775843561.67-
chr20375064163750662337506616512.7-
chr13103630799103631007103630999510.235-
rDNA698773537130507.447+
chr2654301646543037265430364446.456-
chr4173873666173873875173873666444.32+
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101208017781208021281208020611248.05-
chrUn_gl000216805078074580710829.615-
rDNA698873497130806.329+
chr11652669226526722665266922795.633+
chrM971195938733.236-
chrM170228192434599.712-
chr13459651574596538545965278524.52-
chr2157116457157116725157116457423.395+
chr5121364137121364353121364137358.907+
chr16878640718786432387864271307.765-


Visualization

Manual



Motif Analysis

Manual





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