DNA Damage Atlas


GSM6215143-BLISS_HU_BI8626_rep2




Basic Information

Manual

Sample ID:   

SRR19570664


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + BI8626


Treatment Time:   

4hrs + 4hrs


Treatment Dose:   

3.5mM Hydroxyurea + 10uM BI8626


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12127866955127867163127867159874.462-
chr4614121606141236861412360874.462-
chrM1082926700774.541-
chr18776210907762129777621290683.422-
chr9835795518357975783579551588.634+
chrUn_gl000216805068074480706509.49-
chr4934661709346637493466370495.338-
chr18471696994716990447169899492.921-
chrUn_gl000216386223894038940444.869-
chr12642168546421722664216854434.619+
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000216805068074480706706.958-
chrM1082926700615.451-
chr16878641228786432787864244169.753-



Motif Analysis

Manual





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