DNA Damage Atlas


GSM6215144-BLISS_HU_Dox_rep2




Basic Information

Manual

Sample ID:   

SRR19570663


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + Doxycycline


Treatment Time:   

4hrs + 24hrs


Treatment Dose:   

3.5mM Hydroxyurea + 1ug/mL Doxycycline


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr31526300281526302391526302282500.05-
chr81100822291100824371100822291521.66+
chr44450588445079144507891299.28-
chr12867830128678505286785011292.92-
chr161340206913402273134020691292.92+
chr21144091211441114114411131044.57-
chrX1123003391123005421123005391039.43-
chrM164040922348882.051-
chrUn_gl000216805058074780705871.917-
chr11461132704611347046113270791.264+
Download the Full Peak List



Motif Analysis

Manual





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