DNA Damage Atlas

GSM6215146-BLISS_HU_rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570661


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea


Treatment Time:   

4hrs


Treatment Dose:   

3.5mM Hydroxyurea


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.032641


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr101208017781208021481208020611408.2-
rDNA698773497129906.239+
chr11652668906526741665266920880.497+
chr12642169746421721264217011810.822+
chr2232500767232500973232500771749.42+
chr17575748065757501357574806745.8+
chr18442819234428213144282123742.214-
chr6442821244284334428229698.555+
chrUn_gl000216803368074980749654.155-
chr2410018914100209841002091652.575-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr101208017781208021281208020611248.05-
rDNA698873497129806.329+
chr13459651574596538545965385524.52-
chr2157116457157116725157116457423.395+
chr5121364137121364353121364153358.907+
chr16878640718786432387864241307.765-
chr3471616934716194947161882290.699-
chr12764514337645164376451433184.794+


Visualization

Manual



Motif Analysis

Manual





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