DNA Damage Atlas

GSM6215147-BLISS_HU_BI8626_rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570660


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + BI8626


Treatment Time:   

4hrs + 4hrs


Treatment Dose:   

3.5mM Hydroxyurea + 10uM BI8626


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.064516


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chrM5743563898739.259-
chr11652669176526725665266988518.766+
chr5936774339367763993677435487.827+
chr15786871417868734878687141485.471+
chr10120801766120802070120802029454.53-
chr12642169736421722664216975446.854+
chr19324238183242402432424018426.849-
chrX517583655175856751758566373.115-
chr1114941330114941534114941533369.457-
chr7987315389873174398731738367.655-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl000216805068074480715706.958-
chr11652669176526725565266988392.201+
chr12642169736421722664216975368.99+
chr20445272804452754244527342201.046+
chr16878641228786432787864322169.753-


Visualization

Manual



Motif Analysis

Manual





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