DNA Damage Atlas

GSM6215148-BLISS_HU_Dox_rep3

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570659


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + Doxycycline


Treatment Time:   

4hrs + 24hrs


Treatment Dose:   

3.5mM Hydroxyurea + 1ug/mL Doxycycline


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr194296759242967799429675921709.45+
chr111160734511607551116073451503.03+
chr26295400062954205629540001294.6+
chr11760668121760670181760670121288.31-
chr222085156620851772208515661073.6+
chrUn_gl000216805118074280711957.405-
chrM164334282405941.636-
chr17654574165459436545942875.884-
chr4173575011173575213173575213875.884-
chr3840980888409829184098088871.569+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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