DNA Damage Atlas

GSM6215149-BLISS_HU_Dox_BI8626

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19570658


Source Project ID:   

GSE205583

Cell Type:   

U2OS MYC-tet-on


Organism:   

Homo sapiens


Treatment:   

Hydroxyurea + BI8626 + Doxycycline


Treatment Time:   

4hrs + 4hrs + 24hrs


Treatment Dose:   

3.5mM Hydroxyurea + 10uM BI8626 + 1ug/mL Doxycycline


Genotype:   

Dox inducible overexpression of MYC


Layout:   

PAIRED


Instrument model:   

Illumina NextSeq 2000


Technique:   

BLISS


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0


Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10104657683104657889104657885704.348-
chrM514135791694.408-
chr18202188732021908120218873507.328+
chr4190088516190088724190088720507.328-
chr7557715655773655577156504.9+
chr13854745658547477185474565448.222+
chr8133219987133220193133220187448.222-
chr19307621983076240630762198443.912+
chrUn_gl000216756317612575935427.223-
chr6528604615286074952860749412.204-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand