DNA Damage Atlas

GSM6222398-HelaEdU6hTF1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19591478


Source Project ID:   

GSE202784

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

EdU


Treatment Time:   

6hrs


Treatment Dose:   

10uM


Layout:   

SINGLE


Instrument model:   

illumina NextSeq 2000


Technique:   

XR-seq


Others:   

antibody: anti-TFIIH and anti-BrdU


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA1350614796142947.79208/
rDNA2844029111287746.89569/
chr31421631121421673931421644885.32958/
chr142345140023453724234521655.01175/
chr177823507832097827784.64354/
chr11611242871611260431611249314.63392/
chr173487465734877447348769134.57497/
chr104377014643770914437705294.36275/
chr128814025881721588153024.3014/
chrUn_gl000220960311019671008834.3006/
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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