DNA Damage Atlas

GSM6260944-3rd_Activated_T_myc6_rp1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19784926


Source Project ID:   

GSE202887

Cell Type:   

Spleen


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

Activated by a-CD3/CD28, a-IFNg, and a-IL-4


Genotype:   

HH7-tg Cas9 CD45.1


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr944046444440476044404661028735.6+
chr911981245011981265311981245117354.9+
chr782062200820624038206240110679.9-
chr73750407437504276375042749391.18-
chr21623553821623556291623553828777.42+
chr51371905481371907601371905547669.89+
chr152299741122997625229976257598.21-
chr135085831350858531508583137458.79+
chr91005568341005570651005570657039.03-
chr155502134155021543550215436707.99-
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr944046444440475924404661032843.3+
chr911981245011981265311981245118614.8+
chr737504074375042763750427410402.2-
chr126915929569159514691592958474.95+
chr51371905541371907601371905547527.43+
chr135085831350858526508583135846.41+
chr74701262847012829470126285564.05+
chr157656624876566609765662995445.28+
chr121134196381134198391134198374889.91-
chr41018631041018633071018632954841.74-
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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