DNA Damage Atlas

GSM6260947-3rd_Effector_Female_2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19784923


Source Project ID:   

GSE202887

Cell Type:   

Gut


Organism:   

Mus musculus


Strain:   

C57BL/6


Treatment:   

NT


Genotype:   

Rag1-/- NM


Targeted break:   

pST-sgRNA


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2000


Technique:   

PEM-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr8951875859518778995187789678910-
chr16358081033580831235808312662668-
chr19485092348511264850923393164+
chr9440466214404687244046621271216+
chr1188096925880971278809712692967-
chr513719055513719076913719055576784.7+
chr1491353269913534729135346946254.5-
chr1350858318508585205085831823241.8+
chr225063410250636122506361023241.8-
chr629243690292438932924369023127.3+
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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