DNA Damage Atlas

GSM6293321-N-A-1_human_genome

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR19987606


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645129319572.7/
chr6160521554160522048160521668316.91/
chr2330916903309219433091833251.322/
chr15813419418134214681342042111.08/
chr7107410399107410913107410532110.756/
chrUn_gl000216144921145748145465103.256/
chr2032815735328159383281583591.1419/
chr6_mann_hap412186661218884121877471.8137/
chr1143702993437032384370311469.7085/
chr2223466187234664182346630167.7722/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645129372586.8
chr61605215541605217961605216684675.21
chr23309169033091988330918333978.68
chr6_mann_hap41218666121888412187741429.67
chr15779106627791087377910769660.298
chr7107410399107410906107410532625.382
chr4825151808251539682515286246.963
chrUn_gl000216144925145725145465108.972
chr2032815736328159383281583597.4194
chr1860730718607309366073082670.4026
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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