DNA Damage Atlas

GSM6293322-N-A-2_human_genome

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR19987607


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451112664516866645127789717.5/
chr61605215541605217961605216746108.94/
chr23309159833092007330917933779.88/
chr6_mann_hap41218662121888712187732116.72/
chr7107410385107410906107410528908.362/
chr15779106627791114877910782550.262/
chr4190792621907950819079384372.547/
chr4825151798251541882515297339.455/
chr16811198148112003181119921207.705/
chrX784559497845616778456057192.969/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645127772586.8
chr61605215541605217961605216744675.21
chr23309169033091988330917933978.68
chr6_mann_hap41218666121888412187731429.67
chr15779106627791087377910782660.298
chr7107410399107410906107410528625.382
chr4825151808251539682515297246.963
chrUn_gl000216144925145725145525108.972
chr2032815736328159383281584797.4194
chr1860730718607309366073082470.4026
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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