DNA Damage Atlas

GSM6293323-N-A-3_human_genome

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987608


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266450905664516866645129255962.8/
chr61605215541605217991605216755908.41/
chr23309165333091988330918194590.86/
chr6_mann_hap41218662121888612187731903.06/
chr15779106627791090177910780800.422/
chr7107410383107410912107410532697.627/
chr4825151808251540782515292318.514/
chr4190792611907950919079384267.248/
chr20328157353281595432815843171.953/
chr16811198288112003281119929169.829/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516826645129272586.8
chr61605215541605217961605216754675.21
chr23309169033091988330918193978.68
chr6_mann_hap41218666121888412187731429.67
chr15779106627791087377910780660.298
chr7107410399107410906107410532625.382
chr4825151808251539682515292246.963
chrUn_gl000216144925145725145058108.972
chr2032815736328159383281584397.4194
chr1860730718607309366073082770.4026
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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