DNA Damage Atlas

GSM6293324-P-A-1_human_genome

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR19987609


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516936645129224661/
chr61605215531605217841605216671013.39/
chr12921774339217785192177532987.425/
chr2330916903309197933091833454.744/
chr14972045009720520997205108275.145/
chr7834883688348856883488467225.88/
chr17173036751730409217303864206.822/
chr15779106657791088377910773178.971/
chr5554700445547046155470143152.655/
chr6_mann_hap4121866512188831218773150.712/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516746645129276742.8
chr61605215541605217841605216673670.69
chr23309169033091979330918332074.38
chr6_mann_hap4121866512188831218773883.028
chr7107410390107410694107410497795.991
chr15779106657791088377910773534.682
chr17173036751730387517303864128.77
chr10767207947672099476720893128.734
chr555470044554702445547014396.2961
chrUn_gl00021614495414574814555286.201
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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