DNA Damage Atlas

GSM6293325-P-A-2_human_genome

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR19987610


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12664511686645167466451305129067/
chr61605215541605220381605216752203.63/
chr23309159733091988330917911134.36/
chr7107410390107410694107410541971.034/
chr6_mann_hap4121866212188861218773612.56/
chr15779106647791090777910784561.612/
chr4825151798251540882515292148.987/
chr4190792561907949819079376134.854/
chr20328157333281595932815845134.555/
chrX784559517845616678456057106.942/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516746645130576742.8
chr61605215541605217841605216753670.69
chr23309169033091979330917912074.38
chr6_mann_hap4121866512188831218773883.028
chr7107410390107410694107410541795.991
chr15779106657791088377910784534.682
chr17173036751730387517303735128.77
chr10767207947672099476720976128.734
chr555470044554702445547014296.2961
chrUn_gl00021614495414574814552886.201
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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