DNA Damage Atlas

GSM6293326-P-A-3_human_genome

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR19987611


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Spike-in Intensity:   

Leptotrichia wadei


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451165664516886645130473683/
chr61605215541605217971605216744468.01/
chr23309159733091988330917912365.97/
chr6_mann_hap41218662121888512187721409.09/
chr15779106627791090677910783672.74/
chr7107410390107410884107410539662.196/
chr4825151788251540482515290295.716/
chr4190792571907951119079383216.957/
chr20328157363281596332815848160.12/
chrX784559547845616778456059148.625/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516746645130476742.8
chr61605215541605217841605216743670.69
chr23309169033091979330917912074.38
chr6_mann_hap4121866512188831218772883.028
chr7107410390107410694107410539795.991
chr15779106657791088377910783534.682
chr17173036751730387517303774128.77
chr10767207947672099476720893128.734
chr555470044554702445547014396.2961
chrUn_gl00021614495414574814507486.201
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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