DNA Damage Atlas

GSM6293329-Hela_MMS_NT_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987614


Source Project ID:   

GSE190955

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516966645129219369.9/
chr6160521553160521798160521674938.9/
chr7834883668348857283488468775.409/
chr10767205737672099576720893557.609/
chr22172998921730031217300210533.548/
chr17173033511730415917303774495.044/
chr2429468674294728642946967385.953/
chr2330916843309226333091833291.27/
chr5167673577167674210167674108282.063/
chr7871080418710824387108141222.198/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516816645129216676.3
chr6160521553160521797160521674854.326
chr17173036411730409217303774853.714
chr7834883668348856883488468735.931
chr10767205747672099576720893528.367
chr22172998921730031117300210468.579
chr2330916843309199033091833421.523
chr5167673791167674209167674108368.999
chr2429468684294728642946967321.799
chr17897562689760438975942242.32
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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