DNA Damage Atlas

GSM6293331-Hela_MMS_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987616


Source Project ID:   

GSE190955

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

1hr


Treatment Dose:   

1.5mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117066451679664512955129.73/
chr17173035111730409217303706250.603/
chr6160521555160521791160521672219.156/
chr7834883668348856883488466207.632/
chr1076720577767209947672089296.9316/
chr2217299880173003111730020983.1946/
chr710741039210741091010741053769.6413/
chrUn_gl00022811602911987911862453.7924/
chr242946868429472864294696751.4692/
chr9_gl000199_random34115348163428545.2609/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117066451673664512953180.28
chr17173035111730409217303706235.856
chr7834883668348856883488466189.297
chr6160521555160521791160521672116.484
chrUn_gl00021614476314590914553183.2052
chr1076720577767209947672089281.4982
chr2217299893173003111730020969.1763
chr710741039910741067810741053761.4447
chrUn_gl00022811603411979211862454.5626
chr242946868429472864294696746.7681
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab