DNA Damage Atlas

GSM6293332-Hela_MMS_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987617


Source Project ID:   

GSE190955

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

1hr


Treatment Dose:   

1.5mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645103966451686664512272223.75/
chr17173035021730426617303694181.606/
chr783488059834885688348845581.4416/
chrUn_gl00021614476314590914553381.2644/
chr1076720577767211527672096667.1556/
chr616052146316052179616052162858.5481/
chrUn_gl00022811595711979211862453.2569/
chr555470044554704635547021046.0793/
chr2217299713173003111730021044.6311/
chr9_gl000199_random34115348913428240.2478/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645117066451673664512273180.28
chr17173035111730409217303694235.856
chr7834883668348856883488455189.297
chr6160521555160521791160521628116.484
chrUn_gl00021614476314590914553383.2052
chr1076720577767209947672096681.4982
chr2217299893173003111730021069.1763
chr710741039910741067810741053661.4447
chrUn_gl00022811603411979211862454.5626
chr242946868429472864294689346.7681
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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