DNA Damage Atlas

GSM6293333-Hela_MX_NT_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987618


Source Project ID:   

GSE190955

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645117066451693664512945018.92/
chr17173034611730409217303774175.688/
chr6160521554160521863160521707131.548/
chr7834881518348856883488455116.186/
chr1076720516767209947672089383.3203/
chr516767365716767420816767410771.5364/
chr233091684330919823309183253.7348/
chrUn_gl00021614459914595014552252.8812/
chr710741039110741091810741053249.8628/
chr324887053248874712488736849.1135/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451170664516866645129416857.2
chr6160521554160521789160521707740.768
chr17173036741730409217303774231.901
chr7834883688348856883488455159.857
chr2330916903309198233091832122.519
chr1076720577767209947672089394.6315
chr710741039810741091510741053276.7772
chr516767379116767420816767410772.5308
chrUn_gl00021614463214580714552264.1322
chr2217299893173003111730017261.0005
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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