DNA Damage Atlas

GSM6293335-Hela_MX_NT_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987620


Source Project ID:   

GSE190955

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664519316645130617835.2/
chr61605215541605217891605216701102.67/
chr17173035511730409217303785143.991/
chr7834883688348856883488467137.232/
chr2330916903309198733091837134.541/
chr7107410390107410915107410531103.789/
chr1076720577767209947672089395.8243/
chr1577910665779109017791078273.5416/
chrUn_gl00021614463214580714554964.2363/
chr6_mann_hap412186621218884121877261.8162/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451170664516866645130616857.2
chr6160521554160521789160521670740.768
chr17173036741730409217303785231.901
chr7834883688348856883488467159.857
chr2330916903309198233091837122.519
chr1076720577767209947672089394.6315
chr710741039810741091510741053176.7772
chr516767379116767420816767410772.5308
chrUn_gl00021614463214580714554964.1322
chr2217299893173003111730028661.0005
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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