DNA Damage Atlas

GSM6293337-Hela_MX_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987622


Source Project ID:   

GSE190955

Cell Type:   

HeLa


Organism:   

Homo sapiens


Treatment:   

MX


Treatment Time:   

30mins


Treatment Dose:   

33mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516896645130563856.8/
chr61605215531605220401605216731894.59/
chr7834883628348856983488464630.009/
chr17173036741730417317303840591.95/
chr2330912893309224033091802350.371/
chr22172998921730031117300210336.145/
chr5167673786167674208167674107310.578/
chr7107410386107411088107410539306.524/
chr1231007822231008291231007935305.87/
chr2429468674294728742946967226.668/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451168664516886645130568396.5
chr61605215531605217981605216733913.65
chr171730367417303876173038401564.97
chr7834883688348856983488464844.299
chr2330915833309199733091802681.967
chr1231007822231008050231007935572.608
chr20328157333281595632815844393.356
chr7107410391107410947107410539307.975
chr5167673791167674208167674107290.798
chr3523151695231559552315493280.91
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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