DNA Damage Atlas

GSM6293340-K562_MMS_NT_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987625


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516876645129213478.9/
chr171730367417304092173037741173.04/
chr5167673791167674209167674068357.768/
chr6160521553160522109160521671307.649/
chr2429468674294728642946967281.899/
chr22172997061730031117300209281.638/
chr7834883668348891883488468267.922/
chr10767203107672099476720893230.245/
chr5554700445547046455470143209.542/
chr1231007820231008050231007934207.145/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1266451169664516876645129217188.8
chr17173036741730409217303774953.202
chr6160521553160521796160521671859.012
chr7834883688348856883488468664.592
chr10767205747672099476720893430.346
chr5167673791167674208167674068376.627
chr2429468684294728642946967288.317
chr22172997061730031117300209286.555
chr1231007822231008050231007934264.406
chr2330916023309198033091790212.633
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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