DNA Damage Atlas

GSM6293342-K562_MMS_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987627


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

1hr


Treatment Dose:   

1.5mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645116966451674664512985358.44/
chr17173036101730420917303755287.716/
chr6160521554160521789160521670191.501/
chr7834883688348856983488467179.717/
chrUn_gl00021614463514574814553194.2847/
chr2217299645173003111730020967.8745/
chr1076720350767211867672080864.935/
chrUn_gl00022811600111981311862560.5099/
chr242946868429472864294696756.969/
chr555470043554705175547014247.2583/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645116966451674664512984180.05
chr17173036101730419717303755296.171
chr7834883688348856883488467212.067
chr6160521554160521789160521670171.417
chrUn_gl00021614464514574814553195.0513
chr1076720365767209947672080887.1654
chr516767376216767420816767417377.7024
chr2217299673173003111730020969.9863
chr242946868429472864294696767.8046
chr9_gl000199_random34115348113428246.2921
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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