DNA Damage Atlas

GSM6293344-K562_MMS_rep3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987629


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

MMS


Treatment Time:   

1hr


Treatment Dose:   

1.5mM


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr126645116966451685664512923281.94/
chr7834883668348856983488466229.471/
chr17173033201730419717303774207.654/
chr6160521554160521840160521696116.707/
chr1076720365767209997672089596.3264/
chr516767376216767427516767414070.7845/
chr242946847429472864294695764.7526/
chr2217299570173003111730019860.3896/
chrUn_gl00022811587411982911862554.8102/
chrUn_gl00021614417914645114554947.9478/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr126645116966451674664512924180.05
chr17173036101730419717303774296.171
chr7834883688348856883488466212.067
chr6160521554160521789160521696171.417
chrUn_gl00021614464514574814554995.0513
chr1076720365767209947672089587.1654
chr516767376216767420816767414077.7024
chr2217299673173003111730019869.9863
chr242946868429472864294695767.8046
chr9_gl000199_random34115348113428546.2921
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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