DNA Damage Atlas

GSM6293351-E-3-L-3_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987636


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Treatment:   

treated with Endo IV for AP site detection


Treatment Time:   

2hrs


Treatment Dose:   

20 U


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229760972297138569246/
chr710442806810442829810442818215554.9/
chr21268059461268061471268060452877.34/
chr141063312641063317511063313981140.87/
chr2136677205136677623136677521504.331/
chrX405990740603924060036495.488/
chr1123318520123319213123318802482.463/
chr12736183557361884173618499349.037/
chr14295342292953479529534401340.966/
chrM1069184126278.3/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722969717229759972297138578311/
chr710442806810442829810442818215554.9/
chr21268059461268061471268060452877.34/
chr141063312651063317511063313981143.22/
chr1123318680123319172123318802678.317/
chr2136677205136677623136677521504.331/
chrX405990740603924060036495.488/
chr1860044988600472586004611433.204/
chr12736183577361883373618499356.369/
chr14295342292953479529534401340.966/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





Copyright © 2023 All Rights Reserved by Wu lab