DNA Damage Atlas

GSM6293355-E-K562-3

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987640


Source Project ID:   

GSE190955

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

treated with Endo IV for AP site detection


Treatment Time:   

2hrs


Treatment Dose:   

20 U


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr12664511686645169666451305112444/
chr61605215521605220511605216862278.55/
chr2330915833309224033091791619.346/
chr7107410383107411255107410530481.174/
chr17173036741730409217303774319.437/
chr6_mann_hap4121866212188871218773299.739/
chr7834883668348856883488466217.35/
chr10767203527672099576720893157.68/
chr5167673790167674208167674013129.94/
chr15779104517791125077910782119.529/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr12664511696645168666451305136397
chr61605215521605220391605216863024.98
chr23309159633091999330917911168.62
chr7107410386107410939107410530780.282
chr17173036741730409217303774309.387
chr20328157333281595532815847272.558
chr6_mann_hap4121866212188841218773258.423
chr10767205777672099476720893256.678
chr7834883688348856883488466223.041
chr15779106627791116677910782220.671
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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