DNA Damage Atlas

GSM6293357-19-H-2_rep2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987642


Source Project ID:   

GSE190955

Cell Type:   

Heart


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296743722976317229714561880.2/
chr71044280681044282991044281823558.4/
chr21268059461268065211268060461359.58/
chrM071135843526.362/
chr1860044988600472586004610195.669/
chr2136676925136677623136677517140.779/
chr14106331065106331752106331389137.673/
chr1123318680123319262123318829119.941/
chr14295341802953504029534472107.383/
chr13107198154107198659107198296105.744/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296972722976257229714584149.4/
chr71044280681044282961044281823605.22/
chr21268059461268062211268060462842.55/
chrM169595843538.088/
chr1860044988600472586004610195.669/
chr2136677058136677623136677517173.82/
chr14106331191106331748106331389169.804/
chr14295343742953495429534472158.741/
chr1123318680123319228123318829127.281/
chr13107198233107198659107198296125.354/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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