Sample Detail

DNA Damage Atlas

GSM6293359-19-L-2_rep2

Basic Information

Manual

Sample ID:

SRR19987644

Source Project ID:

Cell Type:

Liver

Organism:

Mus musculus

Strain:

C57BL/6J

Harvested Time:

age: 19 months

Layout:

PAIRED

Instrument model:

Illumina NovaSeq 6000

Technique:

SSiNGLe-AP

Fastqc:

Genome Browser

Manual

link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)

Distribution

Manual

Genomic distribution	Repeat distribution	Top 10 simple repeats

Quantification

Manual

Chromosome	Start	End	Summit	Intensity	Strand
chr10	72296970	72297630	72297156	464774	/
chr7	104428068	104428298	104428182	17028.8	/
chr2	126805946	126806147	126806045	1689.99	/
chr1	123318676	123319238	123318805	1261.63	/
chr1	86004178	86004726	86004611	713.825	/
chr14	106331241	106331948	106331386	630.951	/
chrX	4059902	4060428	4060034	509.132	/
chr12	73618051	73618888	73618500	486.323	/
chr10	32816402	32816935	32816527	425.703	/
chrY	57548312	57548529	57548419	304.846	/

Download the Full Peak List

Overlapped Peaks from Replicates

Average Peak Intensity

Top 10 Merged Peaks

Chromosome	Start	End	Summit	Intensity	Strand
chr10	72296971	72297610	72297156	480048	/
chr7	104428068	104428298	104428182	17028.8	/
chr2	126805946	126806147	126806045	1689.99	/
chr1	123318678	123319175	123318805	1426.63	/
chr14	106331263	106331751	106331386	914.102	/
chr1	86004184	86004726	86004611	721.727	/
chr12	73618166	73618876	73618500	573.158	/
chrX	4059902	4060409	4060034	528.212	/
chr10	32816402	32816892	32816527	463.061	/
chr6	18162083	18162322	18162225	364.895	/

Download the Full Merged Peak List

Visualization

Manual

Download the matrix file

Motif Analysis

Manual

Download

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