DNA Damage Atlas

GSM6293360-3-H-3_rep1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR19987645


Source Project ID:   

GSE190955

Cell Type:   

Heart


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296663722976267229715331791.8/
chr71044279641044282981044281301356.85/
chrM169585843432.459/
chr2126805946126806409126806045413.653/
chr186004498860048608600467877.4028/
chr1410633126510633175110633139877.3057/
chr1310719821810719865810719855770.7251/
chrX40599064060395406003353.9372/
rDNA35367363973606548.4508/
chr213667692513667796613667745047.0275/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296971722976267229715346740.8/
chr71044279641044282971044281301360.92/
chr2126805946126806147126806045952.213/
chrM169585843432.459/
chr1860044988600472586004678123.435/
chr1410633126510633175110633139877.3057/
chr1310719821810719865810719855770.7251/
chr213667692513667764513667745067.4668/
chr112331857212331921812331886864.9146/
rDNA35403361913606563.2501/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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