DNA Damage Atlas


GSM6293367-19-L-2_rep2_Unblock




Basic Information

Manual

Sample ID:   

SRR19987652


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 19 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Others:   

An aliquot (1%) of the eluted genomic DNA with spike-ins was used to generate a sequencing library directly to serve as the unblocked control.


Fastqc:  




Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr10722965767229763572297148102632/
chr71044280681044282991044281827494.74/
chr14106331263106331752106331398556.449/
chrX405983040603964060011260.795/
chr1860041698600472686004611246.692/
chr1123318678123319219123318802230.117/
chrM468874259168.356/
chrY39210763921677392156395.6214/
chr1310719823310719887210719833665.0765/
chr1032816403328168903281653059.9306/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr10722966357229761372297148111132/
chr71044280681044282991044281827494.74/
chr14106331265106331752106331398558.734/
chrX405990440603944060011301.245/
chr1860041878600472686004611254.931/
chrY392145139216773921563253.714/
chr1123318678123319219123318802230.117/
chrM468874259168.356/
chr10328164033281664532816530117.936/
chr1273618356736188997361850783.4789/
Download the Full Merged Peak List



Motif Analysis

Manual





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