DNA Damage Atlas


GSM6293371-3-L-3_rep2_Unblock




Basic Information

Manual

Sample ID:   

SRR19987656


Source Project ID:   

GSE190955

Cell Type:   

Liver


Organism:   

Mus musculus


Strain:   

C57BL/6J


Harvested Time:   

age: 3 months


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe-AP


Others:   

An aliquot (1%) of the eluted genomic DNA with spike-ins was used to generate a sequencing library directly to serve as the unblocked control.


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1072296631722976307229715341962.7/
chr71044280681044282981044281822608.99/
chrM370916039129.642/
chr14106330883106331751106331399112.359/
chrX405990440603944060035101.33/
chr186004498860050698600463387.767/
chrY39214513921677392156385.4189/
chr112331866512331920712331879670.5226/
chr1310719786410719865810719833659.4215/
chr213667720513667775413667734454.0109/
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1072296667722976307229715343531.3/
chr71044280681044282971044281822620.38/
chr1860044988600472586004633219.41/
chr14106331264106331751106331399199.944/
chrM370916039129.642/
chr13107198233107198658107198336110.832/
chrX405990540603944060035101.537/
chrY39214513921677392156385.4189/
chr112331866512331920712331879670.5226/
chr213667720513667775413667734454.0109/
Download the Full Merged Peak List



Motif Analysis

Manual





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