DNA Damage Atlas

GSM6310751-MCF-7_2A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR20046538


Source Project ID:   

GSE207714

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33737349853446945.1914/
chrUn_gl00022811550011963811843644.0229/
chr9_gl000199_random16674216891416831441.063/
chr9_gl000199_random82519856628304929.2348/
chr9_gl000199_random986781003219895827.1421/
chrUn_gl00021614443614577514530025.9033/
chrUn_gl00022513142213221313173623.5826/
chrUn_gl00021615416915578715529022.2923/
chrUn_gl00021240452412964086220.9794/
chr9_gl000199_random13868614187014156820.6883/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33737349853446945.1914/
chr9_gl000199_random82519837228304936.2213/
chr9_gl000199_random986781003219895827.1421/
chrUn_gl00021240483412964086221.7793/
chr9_gl000199_random13868614187014156820.6883/
chr9_gl000199_random10256511097210730020.455/
chr9_gl000199_random43862457114432520.3743/
chr9_gl000199_random10094010253010165817.7813/
chr9_gl000199_random13310513607313442516.7436/
chr9_gl000199_random12954113029312972513.4687/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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