DNA Damage Atlas

GSM6310752-MCF-7_2B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

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Sample ID:   

SRR20046537


Source Project ID:   

GSE207714

Cell Type:   

MCF-7


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

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  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33590350223444245.0011/
chr9_gl000199_random82381837228309337.1031/
chr9_gl000199_random87811884708802832.5957/
chr9_gl000199_random48269579764981829.1211/
chrUn_gl00021675386761757584728.1818/
chr9_gl000199_random11247912605011874127.6464/
chr9_gl000199_random13310513827113443627.5787/
chr9_gl000199_random43862458664425627.3279/
chr9_gl000199_random10071211206610723026.8915/
chr9_gl000199_random83844873008437225.5766/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33737349853444251.416/
chr9_gl000199_random82519837228309341.1882/
chr9_gl000199_random986781003219895435.0867/
chr9_gl000199_random83844856628437232.049/
chr9_gl000199_random10256511097210723030.6446/
chr9_gl000199_random43862457114425629.1362/
chrUn_gl00021240483412964088929.0381/
chr9_gl000199_random13868614187014068328.9039/
chr111697949411697977211697964326.4143/
chr9_gl000199_random13310513607313443625.8742/
Download the Full Merged Peak List


Visualization

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Motif Analysis

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