DNA Damage Atlas

GSM6310753-MCF-10A_1A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20046536


Source Project ID:   

GSE207714

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

SINGLE


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random10360810854010722139.4957/
chr9_gl000199_random54319552185500738.5186/
chr9_gl000199_random14004814186114159134.0376/
chr9_gl000199_random88885900208966832.56/
chrUn_gl00021675421763777586332.3859/
chr9_gl000199_random14449114768514532531.995/
chr9_gl000199_random55255577755714631.9885/
chr9_gl000199_random10857311101410910831.6948/
chr9_gl000199_random13329713756813445131.2751/
chr9_gl000199_random83992861328439330.9128/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chrUn_gl00021675560761487586350.9754/
chr9_gl000199_random10360810854010722139.4957/
chr9_gl000199_random98677999839896532.8869/
chr9_gl000199_random11773012408412255132.7323/
chr9_gl000199_random10857311094210910832.6581/
chr9_gl000199_random83992861328439330.9128/
chr9_gl000199_random11248511771611472629.9712/
chr9_gl000199_random82516839908309527.9903/
chr9_gl000199_random43836457964430727.1309/
chr9_gl000199_random87685885988801926.1865/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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