DNA Damage Atlas

GSM6310754-MCF-10A_1B

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20046535


Source Project ID:   

GSE207714

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33759349213445065.4798/
chr9_gl000199_random98677999839894762.8764/
chr9_gl000199_random16673916890016831458.3056/
chr9_gl000199_random87685885988801642.2959/
chr9_gl000199_random82501872388305440.8568/
chr9_gl000199_random10251311094210730835.9807/
chrUn_gl00021675560761487582835.822/
chr9_gl000199_random12410212577812482432.2842/
chr9_gl000199_random11248512408411874530.4634/
chr9_gl000199_random43826457964424625.7617/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random98677999839894762.8764/
chr9_gl000199_random82516839908305446.0798/
chr9_gl000199_random10360810854010730843.7597/
chr9_gl000199_random87685885988801642.2959/
chr1679482317948376794830739.474/
chrUn_gl00021675560761487582835.822/
chr9_gl000199_random12410212577812482432.2842/
chr9_gl000199_random11773012408411874531.6364/
chr9_gl000199_random43836457964424625.8931/
chr9_gl000199_random39964427824022623.4257/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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