DNA Damage Atlas

GSM6310755-MCF-10A_2A

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20046534


Source Project ID:   

GSE207714

Cell Type:   

MCF-10A


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina HiSeq 2500


Technique:   

Break-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33634350593447191.5179/
chr9_gl000199_random87368886608802551.1169/
chr9_gl000199_random10058311225610731047.6914/
chr9_gl000199_random11230512612511874246.0478/
chrUn_gl00021463800660346448333.5131/
chrUn_gl00021240447412974088224.7019/
chrUn_gl00021675406764217591621.0572/
chrUn_gl00021615427515573715527819.5683/
chr9_gl000199_random12742113288712972616.2911/
chrUn_gl00022512986213423213378616.1178/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr9_gl000199_random33727350593447197.9077/
chr1949377219493780984937774511.3249/
chr38690919586909942869095834.47934/
chr219454025945460694543413.95942/
chr82507349625074782250744253.41502/
chr163209749932098736320985273.38123/
chr81068913821068919701068917573.34322/
chr88098452780984978809847433.24591/
chr51254992401255004221254999563.18471/
chr71467810521467816111467812563.14255/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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