DNA Damage Atlas

GSM6323427-K562untreatedRNAB1

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20079790


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1197636830976372499763714718328/
chr279261620792618287926172318240.4/
chr1763393141633935606339345818125.6/
chr1857030507570309275703060716151.3/
rDNA223880155915683.6/
chr1863722706637231286372302514659/
chr268224684682251066822478513792.1/
chr1822420262224206822242036211995.4/
chr1420811030208119202081156711068/
chr211740289711740331611740321411013.5/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr1197636830976372499763714718328/
chr279261620792618287926172318240.4/
chr1763393141633935606339345818125.6/
chr1857030507570309275703060716151.3/
rDNA363880155915740.7/
chr1863722706637231286372302514659/
chr268224684682251066822478513792.1/
chr1822420262224206812242036212024/
chr1420811030208119102081156711193.7/
chr211740289811740331611740321411039.9/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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