DNA Damage Atlas

GSM6323428-K562untreatedRNAB2

Basic Information Genome Browser Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20079789


Source Project ID:   

GSE190735

Cell Type:   

K562


Organism:   

Homo sapiens


Treatment:   

NT


Layout:   

PAIRED


Instrument model:   

Illumina NovaSeq 6000


Technique:   

SSiNGLe


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Distribution

Manual




Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

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Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
rDNA363882155914584.2/
chr1763393141633935606339345814290/
chr1197636829976372499763714713190.7/
chr279261620792618287926172312954.1/
chr1857030507570309275703060711478.1/
chr1863722706637231286372302510344.5/
chr26822468468225106682247859387.85/
chr182242026222420681224203629337.65/
chr21174028981174033161174032148004.22/
chr142081098520811910208115707903/
Download the Full Peak List


Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
rDNA363880155914591.8/
chr1763393141633935606339345814290/
chr1197636830976372499763714713222.2/
chr279261620792618287926172312954.1/
chr1857030507570309275703060711478.1/
chr1863722706637231286372302510344.5/
chr26822468468225106682247859387.85/
chr182242026222420681224203629337.65/
chr142081103020811910208115708307.08/
chr21174028981174033161174032148004.22/
Download the Full Merged Peak List


Visualization

Manual



Motif Analysis

Manual





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