DNA Damage Atlas

GSM6372152-S1_END_seq_KM12_Paired_with_P1-END-seq

Basic Information Genome Browser Telomere Analysis Distribution Quantification Visualization Motif Analysis


Basic Information

Manual

Sample ID:   

SRR20355148


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

NT


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

51.6985


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  



Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)



Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.027674


Distribution

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Genomic distribution Repeat distribution Top 10 simple repeats


Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1588455849884566428845615777.3886-
chr814743148147437591474355470.9466+
chr2040904592409057804090513767.5867-
chr110461943110462012710461969456.7971-
chr259447296594478345944755555.2415-
chr317538788617538862717538820753.0155-
chr1093114970931160489311555251.5976+
chr355725300557259465572557650.0094-
chr217866042917866092517866070548.5809+
chr1052793906527949125279440846.191-
Download the Full Peak List


Visualization

Manual



Motif Analysis

Manual





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