DNA Damage Atlas


GSM6372154-S1_END_seq_KM12_DMSO_replicate2




Basic Information

Manual

Sample ID:   

SRR20355146


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

DMSO


Treatment Time:   

24hrs


Treatment Dose:   

0.001


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

29.5387


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.021246



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1530332809303334763033301878.02-
chr216791944167925111679221570.1585+
chr1283357149833579888335756569.6841-
chr2040904518409055144090512260.5673-
chr414825378514825466314825444854.7444+
chr580740659807413768074100752.4151+
chr497999351980002089799968951.2024+
chrX57195693571962425719592950.5902-
chr1671337519713380097133775950.3837-
chr1588455540884564208845615749.2396-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr20409047174090551440905122102.27-
chr611700411117011741170065079.9067-
chr221450783421450838021450814072.2086+
chr217904635817904679117904636860.9037+
chr742852647428534054285302660.0926-
chr646334790463350014633479259.4619+
chr814743226147437771474355457.8692+
chr1671337519713380097133775957.8674-
chr1530332809303334763033301857.2732-
chrX36382767363833273638308155.889+
Download the Full Merged Peak List



Motif Analysis

Manual





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