DNA Damage Atlas


GSM6372155-S1_END_seq_KM12_APH600nM_replicate2




Basic Information

Manual

Sample ID:   

SRR20355145


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

Aphidicolin


Treatment Time:   

24hrs


Treatment Dose:   

600nM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Spike-in Intensity:   

17.0881


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.017032



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr514750310714750335614750311669.1859+
chr110461925210461997310461969063.9051-
chr1588455745884564148845615758.2168-
chr1283357349833582738335756552.0351-
chr2040904506409057124090512251.5048-
chr414825386014825475914825444850.7151+
chr1581957115819577028195741450.2205-
chr814742963147438311474355450.0455+
chr1023994572400326239987747.5953+
chr1299453025994540149945356346.7757-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr514750311414750335614750311666.2803+
chr810174078101743221017408456.6551+
chr2040904667409057124090512251.7066-
chr1056414771564151065641499648.0247-
chr110461925210461997310461969042.9901-
chr940718221407188664071849342.0014+
chr1588455760884564148845615741.8222-
chr217904635017904679617904636841.2455+
chr611700179117011851170065040.1634-
chr1019453703194546941945419438.9198+
Download the Full Merged Peak List



Motif Analysis

Manual





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