DNA Damage Atlas


GSM6372156-S1_END_seq_KM12_G2arrest_replicate2




Basic Information

Manual

Sample ID:   

SRR20355144


Source Project ID:   

GSE203632

Cell Type:   

KM12


Organism:   

Homo sapiens


Treatment:   

RO3306


Treatment Time:   

24hrs


Treatment Dose:   

10uM


Genotype:   

WT


In-situ Treatment:   

Exo VII + Exo T + S1


Cell Phase:   

G2


Spike-in Intensity:   

17.8622


Spike-in percentage:   

20%


Layout:   

SINGLE


Instrument model:   

Illumina NexSeq550


Technique:   

END-seq


Fastqc:  




Genome Browser

Manual

  link to genome browser visualization (rDNA locus is firstly shown for human and mouse samples)




Telomere Analysis

Manual

Ratio of (G-rich strand/C-rich strand): 0.01633



Quantification

Manual

Peak Intensity Top 10 Peaks
Chromosome Start End Summit Intensity Strand
chr1387981930879829128798242263.6843-
chr414825384114825473214825444857.832+
chr665476158654768856547653857.6914-
chr1150217879502187555021832856.1291-
chr1588455738884567748845615754.7621-
chr2040904258409057794090512252.8111-
chr1283357044833582088335756552.086-
chr1819304461193051701930467351.339-
chr259447333594481575944755550.991-
chr1299452991994539939945356350.8275-
Download the Full Peak List



Overlapped Peaks from Replicates




Average Peak Intensity Top 10 Merged Peaks
Chromosome Start End Summit Intensity Strand
chr8337376523373787433737657107.088+
chr611700332117009851170065078.3247-
chr813700649413700710413700652071.2044+
chr1387981962879826888798242268.1945-
chr2040904723409057734090512268.0936-
chr1442516277425169184251655263.932+
chr1588455851884564628845615761.9076-
chr1480492226804927108049244761.458-
chr1019453903194547551945419460.2321+
chr614204524914204574714204552758.8433+
Download the Full Merged Peak List



Motif Analysis

Manual





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